Transcript: lnc-VRK2-9:1

Basic information

LNCipedia transcript ID: lnc-VRK2-9:1 
LNCipedia gene ID: lnc-VRK2-9
Ensembl Gene ID: ENSG00000273063
Ensembl Transcript ID: ENST00000608934
Location (hg19): chr2:58468484-58468821
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 338 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608934.1
Alternative gene names: ENSG00000273063.1; RP11-334G22.1; AC007250.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -338.3113 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VRK2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VRK2-9:1
4.0 lnc-VRK2-9:1
4.1 lnc-VRK2-9:1
5.0 lnc-VRK2-9:1
5.1 lnc-PAPOLG-44:1
5.2 lnc-VRK2-9:1