Transcript: lnc-VSIG10L2-1:1

Basic information

LNCipedia transcript ID: lnc-VSIG10L2-1:1 
LNCipedia gene ID: lnc-VSIG10L2-1
Location (hg19): chr11:125827795-125828547
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 753 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000582823.1; RP11-680F20.12-001; OTTHUMT00000447231.1; NONHSAT024993
Alternative gene names: ENSG00000264299.1; RP11-680F20.12; OTTHUMG00000179594.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.8609 non-coding 
CPAT coding probability 14.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSIG10L2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-680F20.6.1-1:1
4.0 lnc-RP11-680F20.6.1-1:1
4.1 lnc-RP11-680F20.6.1-1:1
5.0 lnc-RP11-680F20.6.1-1:1
5.1 lnc-HINFP-102:1
5.2 lnc-VSIG10L2-1:1