Transcript: lnc-VSTM2B-5:1

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:1 
LNCipedia gene ID: lnc-VSTM2B-5
Location (hg19): chr19:29704189-29706490
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 430 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026977
Alternative gene names: XLOC_013028; linc-VSTM2B-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.1987 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-5:1
3.1 lnc-VSTM2B-5:1
4.0 lnc-VSTM2B-5:1
4.1 lnc-VSTM2B-5:1
5.0 lnc-VSTM2B-5:1
5.1 lnc-GPI-71:14
5.2 lnc-VSTM2B-5:1