Transcript: lnc-VSTM2B-5:2

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:2 
LNCipedia gene ID: lnc-VSTM2B-5
Location (hg19): chr19:29704202-29706418
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 371 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026978
Alternative gene names: XLOC_013028; linc-VSTM2B-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.1987 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-5:2
3.1 lnc-VSTM2B-5:2
4.0 lnc-VSTM2B-5:2
4.1 lnc-VSTM2B-5:2
5.0 lnc-VSTM2B-5:2
5.1 lnc-GPI-71:16
5.2 lnc-VSTM2B-5:2