Transcript: lnc-VSTM2B-5:3

Basic information

LNCipedia transcript ID: lnc-VSTM2B-5:3 
LNCipedia gene ID: lnc-VSTM2B-5
Location (hg19): chr19:29704690-29706659
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026979; NONHSAT064095
Alternative gene names: XLOC_013028; linc-VSTM2B-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.1987 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSTM2B-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSTM2B-5:3
3.1 lnc-VSTM2B-5:3
4.0 lnc-VSTM2B-5:3
4.1 lnc-VSTM2B-5:3
5.0 lnc-VSTM2B-5:3
5.1 lnc-GPI-71:18
5.2 lnc-VSTM2B-5:3