Transcript: lnc-VSTM4-1:1

Basic information

LNCipedia transcript ID: lnc-VSTM4-1:1 
LNCipedia gene ID: lnc-VSTM4-1
Location (hg19): chr10:50184597-50186927
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 687 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000428825.1; RP11-523O18.5-001; OTTHUMT00000047963.1
Alternative gene names: ENSG00000233665.1; RP11-523O18.5; OTTHUMG00000018181.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.3401 non-coding 
CPAT coding probability 36.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VSTM4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM4-1:1
4.0 lnc-VSTM4-1:1
4.1 lnc-VSTM4-1:1
5.0 lnc-VSTM4-1:1
5.1 lnc-LRRC18-5:5
5.2 lnc-VSTM4-1:1