Transcript: lnc-VSX1-1:5

Basic information

LNCipedia transcript ID: lnc-VSX1-1:5 
LNCipedia gene ID: lnc-VSX1-1
RefSeq ID: NR_027091
Location (hg19): chr20:25121434-25129426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3159 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027850; NR_027091; NR_027091.1
Alternative gene names: XLOC_013704; linc-VSX1-2; LOC284798


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.6074 non-coding 
CPAT coding probability 32.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSX1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSX1-1:5
3.1 lnc-VSX1-1:5
4.0 lnc-VSX1-1:5
4.1 lnc-VSX1-1:5
5.0 lnc-VSX1-1:5
5.1 lnc-CST4-45:6
5.2 lnc-VSX1-1:5