Transcript: lnc-WDR4-2:3

Basic information

LNCipedia transcript ID: lnc-WDR4-2:3 
LNCipedia gene ID: lnc-WDR4-2
Ensembl Gene ID: ENSG00000233056
Ensembl Transcript ID: ENST00000617971
Location (hg19): chr21:44337360-44339453
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2094 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617971.1
Alternative gene names: ENSG00000233056.2; ERVH48-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.541 non-coding 
CPAT coding probability 20.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR4-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-WDR4-2:3
4.1 lnc-WDR4-2:3
5.0 lnc-WDR4-2:3
5.1 lnc-POFUT2-47:7
5.2 lnc-WDR4-2:3