Transcript: lnc-WDR4-4:1

Basic information

LNCipedia transcript ID: lnc-WDR4-4:1 
LNCipedia gene ID: lnc-WDR4-4
Ensembl Gene ID: ENSG00000224100
Ensembl Transcript ID: ENST00000428410
Location (hg19): chr21:44384749-44385473
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028943; ENST00000428410.1; AP001630.5-001; OTTHUMT00000195552.1; NONHSAT082367
Alternative gene names: XLOC_014099; linc-WDR4-2; ENSG00000224100.1; AP001630.5; OTTHUMG00000086837.1; AP001630.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.3708 non-coding 
CPAT coding probability 8.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR4-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR4-3:1
3.1 lnc-WDR4-4:1
4.0 lnc-WDR4-4:1
4.1 lnc-WDR4-4:1
5.0 lnc-WDR4-4:1
5.1 lnc-POFUT2-46:1
5.2 lnc-WDR4-4:1