Transcript: lnc-WDR60-3:1

Basic information

LNCipedia transcript ID: lnc-WDR60-3:1 
LNCipedia gene ID: lnc-WDR60-3
Location (hg19): chr7:158766826-158770364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1301 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013659; NONHSAT124549
Alternative gene names: XLOC_006321;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.0477 non-coding 
CPAT coding probability 7.01% non-coding 
Bazzini small ORFs 1 coding 
seqAAMKRTEGRETTGWDDQLQRGVPSPLRTAEGKTTCPQRGATLSAESFRDLQRHLNDLPAESSFPLWGLLSAES
orfFrame8.638334117
covF1Prop0.101449275

In stringent set: no

Locus conservation

Locus conservation?
lnc-WDR60-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR60-3:1
3.1 lnc-WDR60-3:1
4.0 lnc-WDR60-3:1
4.1 lnc-WDR60-3:1
5.0 lnc-WDR60-3:1
5.1 lnc-RNF32-49:1
5.2 lnc-WDR60-3:1