Transcript: lnc-WDR70-7:17

Basic information

LNCipedia transcript ID: lnc-WDR70-7:17 
LNCipedia gene ID: lnc-WDR70-7
Location (hg19): chr5:37872326-37874327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010665
Alternative gene names: XLOC_004341; linc-EGFLAM-4; GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.8625 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:17 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR70-1:2
3.1 lnc-WDR70-1:4
4.0 GDNF-AS1:5
4.1 GDNF-AS1:5
5.0 GDNF-AS1:5
5.1 lnc-CARD6-57:17
5.2 lnc-WDR70-7:17