Transcript: lnc-WDR70-7:18

Basic information

LNCipedia transcript ID: lnc-WDR70-7:18 
LNCipedia gene ID: lnc-WDR70-7
Location (hg19): chr5:37872453-37874996
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00009381
Alternative gene names: XLOC_004341; linc-EGFLAM-4; GDNFOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.8553 non-coding 
CPAT coding probability 4.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR70-7:18 no no no no

Available literature

  1. Airavaara (2011), Identification of novel GDNF isoforms and cis-antisense GDNFOS gene and their regulation in human middle temporal gyrus of Alzheimer disease., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR70-1:3
3.1 lnc-WDR70-1:5
4.0 GDNF-AS1:6
4.1 GDNF-AS1:6
5.0 GDNF-AS1:6
5.1 lnc-CARD6-57:18
5.2 lnc-WDR70-7:18