Transcript: lnc-WHAMM-1:1

Basic information

LNCipedia transcript ID: lnc-WHAMM-1:1 
LNCipedia gene ID: lnc-WHAMM-1
Location (hg19): chr15:83511246-83514392
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2618 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023268; NONHSAT047870
Alternative gene names: XLOC_011334; linc-FAM103A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.2521 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WHAMM-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WHAMM-1:1
3.1 lnc-WHAMM-1:1
4.0 lnc-WHAMM-1:1
4.1 lnc-WHAMM-1:1
5.0 lnc-WHAMM-1:1
5.1 lnc-WHAMM-1:1
5.2 lnc-WHAMM-1:1