Transcript: lnc-WNT3-1:3

Basic information

LNCipedia transcript ID: lnc-WNT3-1:3 
LNCipedia gene ID: lnc-WNT3-1
Location (hg19): chr17:44851208-44910399
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 559 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT054215
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.3799 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WNT3-1:3 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WNT3-1:3
4.0 lnc-WNT3-1:3
4.1 lnc-WNT3-1:3
5.0 lnc-WNT3-1:3
5.1 lnc-GFAP-53:3
5.2 lnc-WNT3-1:3