Transcript: lnc-WNT5A-2:1

Basic information

LNCipedia transcript ID: lnc-WNT5A-2:1 
LNCipedia gene ID: lnc-WNT5A-2
Ensembl Gene ID: ENSG00000242568
Ensembl Transcript ID: ENST00000469806
Location (hg19): chr3:55369490-55384943
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005776; ENST00000469806; ENST00000469806.1; RP11-875H7.1-001; OTTHUMT00000350792.1; NONHSAT090026
Alternative gene names: XLOC_003134; linc-LRTM1-2; ENSG00000242568; RP11-875H7.1; ENSG00000242568.1; OTTHUMG00000158360.1; AC121764.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -279.6645 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WNT5A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WNT5A-2:1
3.1 lnc-WNT5A-2:1
4.0 lnc-WNT5A-2:1
4.1 lnc-WNT5A-2:1
5.0 lnc-WNT5A-2:1
5.1 lnc-FAM208A-11:1
5.2 lnc-WNT5A-2:1