Transcript: lnc-WRB-2:5

Basic information

LNCipedia transcript ID: lnc-WRB-2:5 
LNCipedia gene ID: lnc-WRB-2
RefSeq ID: NR_111942
Location (hg19): chr21:40685833-40686841
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1009 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_111942; NR_111942.1
Alternative gene names: BRWD1-IT2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.0935 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WRB-2:5 yes no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WRB-2:5
4.0 lnc-WRB-2:5
4.1 lnc-WRB-2:5
5.0 lnc-WRB-2:5
5.1 lnc-SIM2-66:4
5.2 lnc-WRB-2:5