Transcript: lnc-WSB1-1:1

Basic information

LNCipedia transcript ID: lnc-WSB1-1:1 
LNCipedia gene ID: lnc-WSB1-1
Location (hg19): chr17:25641669-25642952
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1284 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000578929.1; RP11-173M1.8-001; OTTHUMT00000448387.1; NONHSAT052305
Alternative gene names: ENSG00000264469.1; RP11-173M1.8; OTTHUMG00000179824.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.9478 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WSB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WSB1-1:1
4.0 lnc-WSB1-1:1
4.1 lnc-WSB1-1:1
5.0 lnc-WSB1-1:1
5.1 lnc-PIPOX-66:1
5.2 lnc-WSB1-1:1