Transcript: lnc-WSCD1-1:3

Basic information

LNCipedia transcript ID: lnc-WSCD1-1:3 
LNCipedia gene ID: lnc-WSCD1-1
Ensembl Gene ID: ENSG00000284837
Ensembl Transcript ID: ENST00000563763
RefSeq ID: NR_040000
Location (hg19): chr17:5675554-5834016
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1821 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT145239; NR_040000; NR_040000.1; ENST00000563763.5
Alternative gene names: LOC339166; ENSG00000284837.1; AC007846.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.1508 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WSCD1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WSCD1-1:3
4.0 lnc-WSCD1-1:3
4.1 lnc-WSCD1-1:3
5.0 lnc-WSCD1-1:3
5.1 lnc-ELP5-34:3
5.2 lnc-WSCD1-1:3