Transcript: lnc-XKR5-1:1

Basic information

LNCipedia transcript ID: lnc-XKR5-1:1 
LNCipedia gene ID: lnc-XKR5-1
Location (hg19): chr8:6666043-6693166
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4888 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000409172; ENST00000409172.3; XKR5-201
Alternative gene names: ENSG00000186530; XKR5; ENSG00000186530.12; OTTHUMG00000153652.2; ENSG00000186530.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2177.886 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XKR5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEFB1-1:2
3.1 lnc-DEFB1-1:1
4.0 lnc-DEFB1-1:1
4.1 lnc-DEFB1-1:1
5.0 lnc-DEFB1-1:1
5.1 lnc-DEFA1B-10:1
5.2 lnc-XKR5-1:1