Transcript: lnc-XKR9-1:9

Basic information

LNCipedia transcript ID: lnc-XKR9-1:9 
LNCipedia gene ID: lnc-XKR9-1
Ensembl Gene ID: ENSG00000253967
Ensembl Transcript ID: ENST00000520259
RefSeq ID: NR_110653
Location (hg19): chr8:71383369-71397922
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2367 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000520259; ENST00000520259.1; RP11-333A23.4-001; OTTHUMT00000378762.1; NONHSAT127159; NR_110653; NR_110653.1
Alternative gene names: ENSG00000253967; RP11-333A23.4; ENSG00000253967.1; OTTHUMG00000164437.1; AC022730.4; LOC101926892


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6048 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XKR9-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC120194.1-1:2
3.1 lnc-AC120194.1-1:2
4.0 lnc-AC120194.1-1:2
4.1 lnc-AC120194.1-1:2
5.0 lnc-AC120194.1-1:2
5.1 lnc-SULF1-10:7
5.2 lnc-XKR9-1:9