Transcript: lnc-XKR9-5:2

Basic information

LNCipedia transcript ID: lnc-XKR9-5:2 
LNCipedia gene ID: lnc-XKR9-5
Location (hg19): chr8:72461067-72464748
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 329 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00015298
Alternative gene names: XLOC_006838; linc-KCNB2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -444.9021 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XKR9-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-383H13.1.1-3:2
3.1 lnc-RP11-383H13.1.1-3:2
4.0 lnc-RP11-383H13.1.1-3:2
4.1 lnc-RP11-383H13.1.1-3:2
5.0 lnc-RP11-383H13.1.1-3:2
5.1 lnc-SULF1-15:2
5.2 lnc-XKR9-5:2