Transcript: lnc-XPC-10:2

Basic information

LNCipedia transcript ID: lnc-XPC-10:2 
LNCipedia gene ID: lnc-XPC-10
Location (hg19): chr3:14562199-14581850
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3445 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000413414.1; GRIP2-003; OTTHUMT00000340584.1
Alternative gene names: ENSG00000144596.7; GRIP2; OTTHUMG00000155544.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2130.1341 coding 
CPAT coding probability 98.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XPC-10:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XPC-5:3
4.0 lnc-XPC-5:3
4.1 lnc-XPC-5:3
5.0 lnc-XPC-5:3
5.1 lnc-SH3BP5-24:2
5.2 lnc-XPC-10:2