Transcript: lnc-XRCC2-13:3

Basic information

LNCipedia transcript ID: lnc-XRCC2-13:3 
LNCipedia gene ID: lnc-XRCC2-13
Location (hg19): chr7:152088263-152105898
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 16674 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000097542.1|ENCT00000419274.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.795 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRCC2-13:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-XRCC2-13:3
5.0 lnc-XRCC2-13:3
5.1 lnc-PAXIP1-17:3
5.2 lnc-XRCC2-13:3