Transcript: lnc-XRCC3-1:1

Basic information

LNCipedia transcript ID: lnc-XRCC3-1:1 
LNCipedia gene ID: lnc-XRCC3-1
Location (hg19): chr14:104146166-104150352
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3057 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4
Alternative transcript names: ENST00000498989; NONHSAT040192
Alternative gene names: ENSG00000246451


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.89 non-coding 
CPAT coding probability 43.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-XRCC3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRCC3-1:1
3.1 lnc-XRCC3-1:1
4.0 lnc-XRCC3-1:1
4.1 lnc-XRCC3-1:1
5.0 lnc-XRCC3-1:1
5.1 lnc-XRCC3-1:1
5.2 lnc-XRCC3-1:1