Transcript: lnc-XRCC3-1:2

Basic information

LNCipedia transcript ID: lnc-XRCC3-1:2 
LNCipedia gene ID: lnc-XRCC3-1
Ensembl Gene ID: ENSG00000246451
Ensembl Transcript ID: ENST00000498989
Location (hg19): chr14:104148699-104150352
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1404 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000498989; ENST00000498989.2; RP11-894P9.1-001; OTTHUMT00000414899.1; NONHSAT140179
Alternative gene names: ENSG00000246451; RP11-894P9.1; ENSG00000246451.2; OTTHUMG00000171724.1; AL049840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.89 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRCC3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRCC3-1:2
3.1 lnc-XRCC3-1:2
4.0 lnc-XRCC3-1:2
4.1 lnc-XRCC3-1:2
5.0 lnc-XRCC3-1:2
5.1 lnc-XRCC3-1:2
5.2 lnc-XRCC3-1:2