Transcript: lnc-YIPF2-2:1

Basic information

LNCipedia transcript ID: lnc-YIPF2-2:1 
LNCipedia gene ID: lnc-YIPF2-2
Ensembl Gene ID: ENSG00000266936
Ensembl Transcript ID: ENST00000587831
Location (hg19): chr19:11121593-11126687
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 366 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061110; ENST00000587831.1
Alternative gene names: ENSG00000266936.1; CTC-215O4.4; AC011442.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.4587 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YIPF2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YIPF2-2:1
4.0 lnc-YIPF2-2:1
4.1 lnc-YIPF2-2:1
5.0 lnc-YIPF2-2:1
5.1 lnc-ZNF823-27:1
5.2 lnc-YIPF2-2:1