Transcript: lnc-YPEL5-2:1

Basic information

LNCipedia transcript ID: lnc-YPEL5-2:1 
LNCipedia gene ID: lnc-YPEL5-2
Ensembl Gene ID: ENSG00000197644
Ensembl Transcript ID: ENST00000359823
Location (hg19): chr2:30122463-30130065
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 200 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000359823.2; AC106870.2-001; OTTHUMT00000324767.1
Alternative gene names: ENSG00000197644.2; AC106870.2; OTTHUMG00000152004.1; AC106870.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.4606 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YPEL5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YPEL5-2:1
4.0 lnc-YPEL5-2:1
4.1 lnc-YPEL5-2:1
5.0 lnc-YPEL5-2:1
5.1 lnc-FOSL2-27:1
5.2 lnc-YPEL5-2:1