Transcript: lnc-YTHDF3-8:1

Basic information

LNCipedia transcript ID: lnc-YTHDF3-8:1 
LNCipedia gene ID: lnc-YTHDF3-8
Ensembl Gene ID: ENSG00000253583
Ensembl Transcript ID: ENST00000523265
Location (hg19): chr8:64498558-64501966
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 730 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523265; ENST00000523265.1; RP11-573J24.1-001; OTTHUMT00000378599.1; NONHSAT126944
Alternative gene names: ENSG00000253583; RP11-573J24.1; ENSG00000253583.1; OTTHUMG00000164397.1; AC018953.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.0919 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YTHDF3-8:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKAIN3-6:1
3.1 lnc-NKAIN3-8:1
4.0 lnc-NKAIN3-8:1
4.1 lnc-NKAIN3-8:1
5.0 lnc-NKAIN3-8:1
5.1 lnc-SGK3-32:1
5.2 lnc-YTHDF3-8:1