Transcript: lnc-YY1-1:2

Basic information

LNCipedia transcript ID: lnc-YY1-1:2 
LNCipedia gene ID: lnc-YY1-1
Ensembl Gene ID: ENSG00000258504
Ensembl Transcript ID: ENST00000555428
Location (hg19): chr14:100757454-100758287
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555428; ENST00000555428.1; RP11-638I2.6-002; OTTHUMT00000414229.1; NONHSAT039679
Alternative gene names: ENSG00000258504; RP11-638I2.6; ENSG00000258504.1; OTTHUMG00000171570.1; ENSG00000258504.2; AL157871.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -411.2836 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YY1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-YY1-1:2
3.1 lnc-YY1-1:2
4.0 lnc-YY1-1:2
4.1 lnc-YY1-1:2
5.0 lnc-YY1-1:2
5.1 lnc-CYP46A1-15:2
5.2 lnc-YY1-1:2