Transcript: lnc-ZBED2-6:1

Basic information

LNCipedia transcript ID: lnc-ZBED2-6:1 
LNCipedia gene ID: lnc-ZBED2-6
Ensembl Gene ID: ENSG00000240895
Ensembl Transcript ID: ENST00000474711
Location (hg19): chr3:110246329-110248429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 801 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005810; ENST00000474711; ENST00000474711.1; RP11-119D18.1-001; OTTHUMT00000353896.1; NONHSAT091129
Alternative gene names: XLOC_003212; linc-DPPA4-2; ENSG00000240895; RP11-119D18.1; ENSG00000240895.1; OTTHUMG00000159221.1; AC117430.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.8127 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBED2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-553A10.1.1-1:1
3.1 lnc-RP11-553A10.1.1-2:1
4.0 lnc-RP11-553A10.1.1-2:1
4.1 lnc-RP11-553A10.1.1-2:1
5.0 lnc-RP11-553A10.1.1-2:1
5.1 lnc-IFT57-32:1
5.2 lnc-ZBED2-6:1