Transcript: lnc-ZBED4-9:1

Basic information

LNCipedia transcript ID: lnc-ZBED4-9:1 
LNCipedia gene ID: lnc-ZBED4-9
Ensembl Gene ID: ENSG00000279494
Ensembl Transcript ID: ENST00000624617
Location (hg19): chr22:50245073-50247012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1940 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624617.1
Alternative gene names: ENSG00000279494.1; RP11-494O16.4; AL117328.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 40.7297 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBED4-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZBED4-9:1
4.1 lnc-ZBED4-9:1
5.0 lnc-ZBED4-9:1
5.1 lnc-PIM3-9:1
5.2 lnc-ZBED4-9:1