Transcript: lnc-ZBTB46-2:3

Basic information

LNCipedia transcript ID: lnc-ZBTB46-2:3 
LNCipedia gene ID: lnc-ZBTB46-2
Ensembl Gene ID: ENSG00000268858
Ensembl Transcript ID: ENST00000601296
Location (hg19): chr20:62492565-62495646
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3082 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000601296.2
Alternative gene names: ENSG00000268858.2; RP4-591C20.9; AL118506.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 220.6992 coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZBTB46-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZBTB46-2:3
4.1 lnc-ZBTB46-2:3
5.0 lnc-ZBTB46-2:3
5.1 lnc-SPATA2-207:3
5.2 lnc-ZBTB46-2:3