Transcript: lnc-ZC3H12D-7:1

Basic information

LNCipedia transcript ID: lnc-ZC3H12D-7:1 
LNCipedia gene ID: lnc-ZC3H12D-7
Ensembl Gene ID: ENSG00000234675
Ensembl Transcript ID: ENST00000422023
Location (hg19): chr6:148338558-148342110
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011590; ENST00000422023; ENST00000422023.1; RP11-242F11.2-001; OTTHUMT00000042616.1; NONHSAT115467
Alternative gene names: XLOC_005869; linc-SHPRH-2; ENSG00000234675; RP11-242F11.2; ENSG00000234675.1; OTTHUMG00000015770.1; AL445123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.5788 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H12D-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZC3H12D-3:1
3.1 lnc-ZC3H12D-7:1
4.0 lnc-ZC3H12D-7:1
4.1 lnc-ZC3H12D-7:1
5.0 lnc-ZC3H12D-7:1
5.1 lnc-RAET1G-32:1
5.2 lnc-ZC3H12D-7:1