Transcript: lnc-ZC3H12D-8:2

Basic information

LNCipedia transcript ID: lnc-ZC3H12D-8:2 
LNCipedia gene ID: lnc-ZC3H12D-8
Ensembl Gene ID: ENSG00000226249
Ensembl Transcript ID: ENST00000448909
Location (hg19): chr6:148062570-148064460
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 603 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011589; ENST00000448909; ENST00000448909.1; RP11-307P5.2-001; OTTHUMT00000042611.1
Alternative gene names: XLOC_005868; linc-SHPRH-3; ENSG00000226249; RP11-307P5.2; ENSG00000226249.1; OTTHUMG00000015768.1; AL365271.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.9272 non-coding 
CPAT coding probability 17.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H12D-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZC3H12D-4:2
3.1 lnc-ZC3H12D-8:2
4.0 lnc-ZC3H12D-8:2
4.1 lnc-ZC3H12D-8:2
5.0 lnc-ZC3H12D-8:2
5.1 lnc-RAET1G-34:3
5.2 lnc-ZC3H12D-8:2