Transcript: lnc-ZCCHC7-2:11

Basic information

LNCipedia transcript ID: lnc-ZCCHC7-2:11 
LNCipedia gene ID: lnc-ZCCHC7-2
Ensembl Gene ID: ENSG00000281649
Ensembl Transcript ID: ENST00000628924
Location (hg19): chr9:37084987-37087821
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2835 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131044; ENST00000588314.1; ENST00000628924.1
Alternative gene names: ENSG00000233137.2; RP11-220I1.1; ENSG00000281649.1; EBLN3; EBLN3P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.6 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZCCHC7-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZCCHC7-2:11
4.0 lnc-ZCCHC7-2:11
4.1 lnc-ZCCHC7-2:11
5.0 lnc-ZCCHC7-2:11
5.1 lnc-GRHPR-11:27
5.2 lnc-ZCCHC7-2:11