Transcript: lnc-ZCRB1-1:1

Basic information

LNCipedia transcript ID: lnc-ZCRB1-1:1 
LNCipedia gene ID: lnc-ZCRB1-1
Ensembl Gene ID: ENSG00000258068
Ensembl Transcript ID: ENST00000547898
Location (hg19): chr12:42879155-42883821
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547898.1; RP11-328C8.5-001; OTTHUMT00000404159.1; NONHSAT027782
Alternative gene names: ENSG00000258068.1; RP11-328C8.5; OTTHUMG00000169456.1; AC079600.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.5205 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZCRB1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZCRB1-1:1
4.0 lnc-ZCRB1-1:1
4.1 lnc-ZCRB1-1:1
5.0 lnc-ZCRB1-1:1
5.1 lnc-RPAP3-49:2
5.2 lnc-ZCRB1-1:1