Transcript: lnc-ZDHHC13-2:1

Basic information

LNCipedia transcript ID: lnc-ZDHHC13-2:1 
LNCipedia gene ID: lnc-ZDHHC13-2
Ensembl Gene ID: ENSG00000255244
Ensembl Transcript ID: ENST00000528646
Location (hg19): chr11:18956532-18961268
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 707 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528646.1; RP11-583F24.8-001; OTTHUMT00000394483.1; NONHSAT018324
Alternative gene names: ENSG00000255244.1; RP11-583F24.8; OTTHUMG00000167394.1; AC023078.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.7999 non-coding 
CPAT coding probability 13.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC13-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC13-2:1
4.0 lnc-ZDHHC13-2:1
4.1 lnc-ZDHHC13-2:1
5.0 lnc-ZDHHC13-2:1
5.1 lnc-KCNC1-19:1
5.2 lnc-ZDHHC13-2:1