Transcript: lnc-ZEB2-3:1

Basic information

LNCipedia transcript ID: lnc-ZEB2-3:1 
LNCipedia gene ID: lnc-ZEB2-3
Ensembl Gene ID: ENSG00000235435
Ensembl Transcript ID: ENST00000454965
Location (hg19): chr2:146051845-146089415
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003414; ENST00000454965; ENST00000454965.1; AC064865.1-001; OTTHUMT00000332167.2; NONHSAT074834
Alternative gene names: XLOC_002346; linc-ZEB2-5; ENSG00000235435; AC064865.1; ENSG00000235435.1; OTTHUMG00000153704.2; AC096666.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.4567 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZEB2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZEB2-3:1
3.1 lnc-ZEB2-3:1
4.0 lnc-ZEB2-3:1
4.1 lnc-ZEB2-3:1
5.0 lnc-ZEB2-3:1
5.1 lnc-MMADHC-55:1
5.2 lnc-ZEB2-3:1