Transcript: lnc-ZFAT-3:1

Basic information

LNCipedia transcript ID: lnc-ZFAT-3:1 
LNCipedia gene ID: lnc-ZFAT-3
Ensembl Gene ID: ENSG00000254372
Ensembl Transcript ID: ENST00000518674
Location (hg19): chr8:136468108-136469195
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 318 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518674.1; RP11-343P9.1-001; OTTHUMT00000377535.1; NONHSAT129286; FPKM1_group_32343_transcript_1
Alternative gene names: ENSG00000254372.1; RP11-343P9.1; OTTHUMG00000164166.1; AC040914.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFAT-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFAT-3:1
4.0 lnc-ZFAT-3:1
4.1 lnc-ZFAT-3:1
5.0 lnc-ZFAT-3:1
5.1 lnc-SLURP2-63:6
5.2 lnc-ZFAT-3:1