Transcript: lnc-ZFC3H1-1:1

Basic information

LNCipedia transcript ID: lnc-ZFC3H1-1:1 
LNCipedia gene ID: lnc-ZFC3H1-1
Ensembl Gene ID: ENSG00000257761
Ensembl Transcript ID: ENST00000546601
Location (hg19): chr12:71976073-71977632
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 527 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546601.1; RP11-186F10.2-001; OTTHUMT00000404750.1; NONHSAT029434
Alternative gene names: ENSG00000257761.1; RP11-186F10.2; OTTHUMG00000169544.1; AC078860.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 200.8761 coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZFC3H1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFC3H1-1:1
4.0 lnc-ZFC3H1-1:1
4.1 lnc-ZFC3H1-1:1
5.0 lnc-ZFC3H1-1:1
5.1 lnc-LRRC10-19:1
5.2 lnc-ZFC3H1-1:1