Transcript: lnc-ZFHX4-2:3

Basic information

LNCipedia transcript ID: lnc-ZFHX4-2:3 
HGNC Gene Symbol: lnc-ZFHX4-2    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1111
Ensembl Gene ID: ENSG00000254300
Ensembl Transcript ID: ENST00000518732
RefSeq ID: NR_105006
Location (hg19): chr8:77318889-77436591
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1663 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518732; ENST00000518732.1; RP11-706J10.1-001; OTTHUMT00000379189.1; NONHSAT127331; NR_105006.1
Alternative gene names: ENSG00000254300; RP11-706J10.1; ENSG00000254300.1; OTTHUMG00000164553.1; LINC01111


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.7784 non-coding 
CPAT coding probability 42.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZFHX4-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFHX4-2:3
3.1 lnc-ZFHX4-2:3
4.0 lnc-ZFHX4-2:3
4.1 lnc-ZFHX4-2:3
5.0 lnc-ZFHX4-2:3
5.1 lnc-SULF1-58:11
5.2 lnc-ZFHX4-2:3