Transcript: lnc-ZFHX4-3:2

Basic information

LNCipedia transcript ID: lnc-ZFHX4-3:2 
LNCipedia gene ID: lnc-ZFHX4-3
Location (hg19): chr8:78311308-78518940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000518706; ENST00000518706.1; RP11-38H17.1-001; OTTHUMT00000379128.1; NONHSAT127355
Alternative gene names: ENSG00000254366; RP11-38H17.1; ENSG00000254366.1; OTTHUMG00000164531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.7916 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFHX4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFHX4-3:2
3.1 lnc-ZFHX4-3:2
4.0 lnc-ZFHX4-3:2
4.1 lnc-ZFHX4-3:2
5.0 lnc-ZFHX4-3:2
5.1 lnc-SULF1-67:3
5.2 lnc-ZFHX4-3:2