Transcript: lnc-ZFHX4-3:7

Basic information

LNCipedia transcript ID: lnc-ZFHX4-3:7 
LNCipedia gene ID: lnc-ZFHX4-3
Ensembl Gene ID: ENSG00000254366
Ensembl Transcript ID: ENST00000518706
Location (hg19): chr8:78311308-78449526
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147642; ENST00000518706.2; ENST00000518706.6
Alternative gene names: ENSG00000254366.2; RP11-38H17.1; ENSG00000254366.6; AC062004.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.7916 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFHX4-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFHX4-3:7
4.0 lnc-ZFHX4-3:7
4.1 lnc-ZFHX4-3:7
5.0 lnc-ZFHX4-3:7
5.1 lnc-SULF1-67:4
5.2 lnc-ZFHX4-3:7