Transcript: lnc-ZFP57-16:2

Basic information

LNCipedia transcript ID: lnc-ZFP57-16:2 
LNCipedia gene ID: lnc-ZFP57-16
Location (hg19): chr6:29758571-29760654
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2084 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1190:1
Alternative gene names: HCGIV-10; HCGIV.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.4477 non-coding 
CPAT coding probability 54.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZFP57-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 HCG4:2
4.1 HCG4:2
5.0 HCG4:2
5.1 lnc-SFTA2-33:2
5.2 lnc-ZFP57-16:2