Transcript: lnc-ZHX2-6:7

Basic information

LNCipedia transcript ID: lnc-ZHX2-6:7 
LNCipedia gene ID: lnc-ZHX2-6
Ensembl Gene ID: ENSG00000254018
Ensembl Transcript ID: ENST00000523550
Location (hg19): chr8:122896963-122916512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523550.1; RP11-785H20.1-001; OTTHUMT00000381217.1; NONHSAT128481
Alternative gene names: ENSG00000254018.1; RP11-785H20.1; OTTHUMG00000164966.2; AC104036.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.3626 non-coding 
CPAT coding probability 6.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZHX2-6:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-785H20.1.1-1:7
4.0 lnc-RP11-785H20.1.1-1:7
4.1 lnc-RP11-785H20.1.1-1:7
5.0 lnc-RP11-785H20.1.1-1:7
5.1 lnc-NOV-16:7
5.2 lnc-ZHX2-6:7