Transcript: lnc-ZIC1-1:6

Basic information

LNCipedia transcript ID: lnc-ZIC1-1:6 
LNCipedia gene ID: lnc-ZIC1-1
RefSeq ID: NR_121655
Location (hg19): chr3:147139114-147227697
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 661 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121655; NR_121655.1
Alternative gene names: LOC440982


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -231.6996 non-coding 
CPAT coding probability 7.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC1-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZIC1-1:6
4.0 lnc-ZIC1-1:6
4.1 lnc-ZIC1-1:6
5.0 lnc-ZIC1-1:6
5.1 lnc-ZIC1-1:6
5.2 lnc-ZIC1-1:6