Transcript: lnc-ZIC1-5:3

Basic information

LNCipedia transcript ID: lnc-ZIC1-5:3 
LNCipedia gene ID: lnc-ZIC1-5
Ensembl Gene ID: ENSG00000239922
Ensembl Transcript ID: ENST00000485006
Location (hg19): chr3:147657807-147724542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005612; ENST00000485006; ENST00000485006.1; RP11-71N10.1-002; OTTHUMT00000355526.2; NONHSAT092593
Alternative gene names: XLOC_002859; linc-AGTR1-4; ENSG00000239922; RP11-71N10.1; ENSG00000239922.1; OTTHUMG00000159460.2; AC092958.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.7655 non-coding 
CPAT coding probability 3.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZIC1-4:3
3.1 lnc-ZIC1-5:3
4.0 lnc-ZIC1-5:3
4.1 lnc-ZIC1-5:3
5.0 lnc-ZIC1-5:3
5.1 lnc-ZIC1-5:3
5.2 lnc-ZIC1-5:3