Transcript: lnc-ZIC1-5:4

Basic information

LNCipedia transcript ID: lnc-ZIC1-5:4 
LNCipedia gene ID: lnc-ZIC1-5
Location (hg19): chr3:147713539-147724874
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 601 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006257; NONHSAT092595
Alternative gene names: XLOC_002859; linc-AGTR1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.7655 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC1-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZIC1-4:4
3.1 lnc-ZIC1-5:4
4.0 lnc-ZIC1-5:4
4.1 lnc-ZIC1-5:4
5.0 lnc-ZIC1-5:4
5.1 lnc-ZIC1-5:4
5.2 lnc-ZIC1-5:4