Transcript: lnc-ZIC3-3:2

Basic information

LNCipedia transcript ID: lnc-ZIC3-3:2 
LNCipedia gene ID: lnc-ZIC3-3
Ensembl Gene ID: ENSG00000283692
Ensembl Transcript ID: ENST00000636095
Location (hg19): chrX:136656128-137063922
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1835 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636095.1
Alternative gene names: ENSG00000283692.1; RP11-158M9.1; Z96074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.1196 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC3-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZIC3-3:2
5.0 lnc-ZIC3-3:2
5.1 lnc-MAGEA11-130:2
5.2 lnc-ZIC3-3:2