Transcript: lnc-ZMYND19-21:2

Basic information

LNCipedia transcript ID: lnc-ZMYND19-21:2 
LNCipedia gene ID: lnc-ZMYND19-21
Ensembl Gene ID: ENSG00000237419
Ensembl Transcript ID: ENST00000428088
Location (hg19): chr9:141090383-141093775
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 538 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015898; ENST00000428088; ENST00000428088.1; RP11-885N19.6-001; OTTHUMT00000055377.1; NONHSAT135768
Alternative gene names: XLOC_007906; linc-C9orf37-2; ENSG00000237419; RP11-885N19.6; ENSG00000237419.1; OTTHUMG00000020999.1; AL954642.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 70.7388 coding 
CPAT coding probability 11.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZMYND19-21:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL772363.1-2:1
3.1 lnc-AL772363.1-2:1
4.0 lnc-AL772363.1-2:1
4.1 lnc-AL772363.1-2:1
5.0 lnc-AL772363.1-2:1
5.1 lnc-FAM166A-21:2
5.2 lnc-ZMYND19-21:2